PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38133.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 412aa    MW: 47539.2 Da    PI: 10.2343
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38133.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-09389411426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   + Cr+++++ +C+y ++CkF+Hg
  MLOC_38133.1 389 KACRYYQQGLWCPYEGSCKFSHG 411
                   57******88************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.953385412IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5386411IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5388411IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6389411IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNQISSQTVV PQQKVVSTDT VDQRFNKGRT DSLQQGEPEK ARQQQLSSKQ NPAVHLFHQQ  60
FLNQGPSVQH GKPEKTRQQQ ILARPSPAQQ IFKHPAQHDN HRPTPALQMF KNPQGHNNQL  120
QQQNKVLPQV GTTKTFSILG QAPCLQYGGS GNAVQQQKLS KPTPTEQIRN QSQPLKHEHQ  180
NLVLPQEDAK KGTNKVHSID HGKAPCLQYV GSGNARQQQS SRLALPQQIK NPPQPPKHQH  240
TEVLRQEDGN RTYRVEPVDR QNNNYHNTRY DVTAFQRHGT QHAKTHQHGS NGHPYAHVDS  300
QWHQPLRPRI QDFSSRNQEG DYRDHRQTTR EQYNPQGRHH HNQYGHGQMI QDQYQPQKTH  360
HQNGHDSWRM NHNQYHPQEN HAQQFPAPKA CRYYQQGLWC PYEGSCKFSH GS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749660.0AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567347.11e-121PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBLM0VX950.0M0VX95_HORVD; Uncharacterized protein
STRINGMLOC_38133.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022